QGP Germline Whole Genome Primary & Secondary analyses pipeline
Version 1
Genomic raw data is processed using the Dragen solution.
All callers from the Dragen DNA pipeline are activated.
This pipeline takes two types of input files:
Genomic raw data is processed using the Dragen solution.
All callers from the Dragen DNA pipeline are activated.
This pipeline takes two types of input files:
Genomic Workshop
Details
01 December, 2024
02 December, 2024
Mandarin Oriental Doha
Doha Health Week
Genomic Report Campaign
09 September, 2024
31 December, 2024
Qatar Foundation - HQ
Jamil Alenbawi1, Yasser A. Al‑Sarraj, Umm‑Kulthum. Umlai1, Ayat Kadhi, Nagham N. Hendi1,
Georges Nemerand Omar M. E. Albagha1
Layla I. Mohammed1, Rozaimi Razali1, Zain Zaki Zakaria, Fatiha M. Benslimane, Farhan Cyprian and Maha Al-Asmakh1,
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Genomic Data Test
Genomic raw data are processing using Dragen hardware.
This pipeline tests each WGS sample, independently. If a sample fails this test, then it is excluded from the aggregation and not released or reported in this document. These tests detect sample swaps, cross-individual contamination, and sample preparation/sequencing errors. The list of specific QC processes is listed in the table below: